Basic Information
VIS ID
TVIS30011072
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
142131708/141121609 (Hg38)
End
142131708/141121609 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA8D
Nearest miRNA
hsa-mir-1204/Upstream/388956; hsa-mir-10400/Downstream/664633;
Nearest TSS
ENST00000518652/Upstream/4331; ENST00000518347/Downstream/6512;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/119801, chr8-CpG: 99/Downstream/6500
Nearby gene
DENND3(No orient, 7012)
Upstream sequence
TATTTTAAAGGAAAACCAACTTTTCACAAATGGGTTTATAGCTGATTGGGACAGGAGGGGGCTGCCTGAGCAGGCCAGGGGCATTTGACCAGGCGGCCCA
Downstream sequence
CCTGTGGCATGGTTAACGGTGATGTCCACAGCACCTGTGCTGTTTGCTGGGACCCCATCACGTGACCGTTCTCACTGTGGATGGTGAAGGGTTTGTTCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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