Basic Information
VIS ID
TVIS30011078
Fusion event
HIV-ZNF16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
146174205/144948819 (Hg38)
End
146174205/144948819 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA8D
Target gene
ZNF16
Nearest miRNA
hsa-mir-10400/Upstream/156828;
Nearest TSS
ENST00000518652/Upstream/289; ENST00000530223/Downstream/1776;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/46149, chr8-CpG: 54/Downstream/1630
Upstream sequence
GATAAATTACACCCAACTATGCTATGGCTTCACACCTTATTTTTCTCACTTCATTATGTGTGGGATCTTGCTTACCAGGACAcagaataaatgccccctc
Downstream sequence
tcacccaggtccatatcctaatccctggaacttgtgcttatgttacactacataccaaaaaggactttgcaaagggaattaaggttatggacgtgaatta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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