Basic Information
VIS ID
TVIS30011087
Fusion event
HIV-ADAMTSL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
18880728/18880730 (Hg38)
End
18880728/18880730 (Hg38)
Orient
-
Location type
Intronic
Target gene
ADAMTSL1
miRNAs that regulate target gene
hsa-mir-132-3p ; hsa-mir-25-3p ; hsa-mir-3202 ; hsa-mir-3689d ; hsa-mir-377-5p ; hsa-mir-4533 ; hsa-mir-6079 ; hsa-mir-6086 ; hsa-mir-6133 ; hsa-mir-6134 ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-6894-5p ; hsa-mir-7154-3p ; hsa-mir-765 ; hsa-mir-766-5p ; hsa-mir-7847-3p
Nearest miRNA
hsa-mir-101-2/Upstream/307351; hsa-let-7a-1/Downstream/1530418;
Nearest TSS
ENST00000422679/Upstream/50807; ENST00000489062/Downstream/24761;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/102985, chr9-CpG: 15/Downstream/147122
Upstream sequence
ttccatttatagagcacaggcagattagatgtaacgtaattcttaagggacccaggattgttggaactagagatgaccattggcttcactttaaagtcac
Downstream sequence
caggtgcattatcccctaacaagagagtcagcctgtcctttgaagctttgaagccaggtattgacttctctctagttatcaagctcctagatagcatctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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