VISDB Viral Integration Site DataBase

VIS ID

TVIS30011088

Fusion event

HIV-DENND4C integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

p22.1

Reference genome

Start

End

19316043/19316045 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-4775 ; hsa-mir-550b-2-5p ; hsa-mir-1227-3p ; hsa-mir-5189-3p ; hsa-mir-4714-3p ; hsa-mir-7849-3p ; hsa-mir-590-3p ; hsa-mir-3978 ; hsa-mir-6124 ; hsa-mir-3148 ; hsa-mir-33a-3p ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-129-5p ; hsa-mir-4776-3p ; hsa-mir-1263 ; hsa-mir-150-3p ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-5590-5p ; hsa-mir-302f ; hsa-mir-5692a ; hsa-mir-633 ; hsa-mir-223-5p ; hsa-mir-496 ; hsa-mir-4781-3p ; hsa-mir-1304-3p ; hsa-mir-215-3p ; hsa-mir-3664-5p ; hsa-mir-3672 ; hsa-mir-4639-3p ; hsa-mir-6773-3p ; hsa-mir-6794-3p ; hsa-mir-6864-3p ; hsa-mir-6879-3p ; hsa-mir-8055

Nearest miRNA

hsa-mir-101-2/Upstream/742666; hsa-let-7a-1/Downstream/1095103;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/84725, chr9-CpG: 48/Downstream/63751

Upstream sequence

ATGATCATAGATTATATTGAATAATGGCGTTATGATTATTTTTAACTGTgagggctggatgaactacatgtgcttttaatccttacttaaattccagttc

Downstream sequence

tTGTCTTTGGGCACACAGCATTTTTGAAGCCTACCAGTAGGTAGTTTGAAGTCTCATGTCAACTAGGTTTGACACTTAGAATATTATAATTCTAAAATGT