VISDB Viral Integration Site DataBase

VIS ID

TVIS30011090

Fusion event

HIV-RNF38 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

p13.2

Reference genome

Start

End

36368626/36368629 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-218-5p ; hsa-mir-7-5p ; hsa-mir-26b-5p ; hsa-mir-1250-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-3613-3p ; hsa-mir-1205 ; hsa-mir-3180-5p ; hsa-mir-142-3p ; hsa-mir-653-5p ; hsa-mir-6077 ; hsa-mir-5585-3p ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-1827 ; hsa-mir-3166 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4704-5p ; hsa-mir-4418 ; hsa-mir-409-3p ; hsa-mir-6885-3p ; hsa-mir-4477b ; hsa-mir-1178-3p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-7158-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-488-5p ; hsa-mir-6816-3p ; hsa-mir-8080 ; hsa-mir-4668-3p ; hsa-mir-130a-5p ; hsa-mir-23b-3p ; hsa-mir-23c ; hsa-mir-23a-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p

Nearest miRNA

hsa-mir-101-2/Upstream/635634; hsa-let-7a-1/Downstream/454910;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/109740, chr9-CpG: 126/Downstream/31625

Upstream sequence

TTTGCTTTTCTTGCTCAAGGGGATGGGGAGAAGGTACAAAAATTGTGTTTTTCAGTATTTTATATCCATACTTTTATCAGGTTACGGCCACAAATAAGGT

Downstream sequence

AAGCTTTCCTACATGATCAATTTTTAAGTGTTTCATGAACATAATAAAAATGTCTGGCATAAGAAGAGTATCTAGGTAAGATATTTTCTCAATTGTCACT