Basic Information
VIS ID
TVIS30011091
Fusion event
HIV-FRG1JP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q13
Reference genome
GRCh37/hg19
Start
68432552/63836818 (Hg38)
End
68432552/63836818 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA9F
Target gene
FRG1JP
Nearest miRNA
hsa-mir-101-2/Upstream/22602983; hsa-let-7a-1/Downstream/6973157;
Nearest TSS
ENST00000422679/Upstream/22659; ENST00000615302/Downstream/532576;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/18640, chr9-CpG: 71/Downstream/22350
Upstream sequence
TGTTTCTCCTAATGCAAAGAAGACGGGTACTATTACTAAAAATATTTTTAAAATGTAAGGGCTAAGGCCCCAGAAGTTCTGCTATGATTTTTTATGTTTC
Downstream sequence
ATAGAGTGATTATCATCACAGAAGCTCAAGCATTATGTAAAtacaaacgcgtataccccgacctggtaattctgcttcttgaaatttatcttcaggtcca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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