Basic Information
VIS ID
TVIS30011092
Fusion event
HIV-PGM5P2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
69118543/41045314 (Hg38)
End
69118543/41045314 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
PGM5P2
Nearest miRNA
hsa-mir-101-2/Upstream/116222; hsa-let-7a-1/Downstream/188441;
Nearest TSS
ENST00000422679/Upstream/256038; ENST00000613309/Downstream/28396;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/52579, chr9-CpG: 83/Downstream/28573
Upstream sequence
AAGTTCTCATTAAACACAAATGCTTTCCAGTATCTAGCACCACCCAGTAACCAAGAATCCAAAAAGTTTTATTCATTTATGTGACATACCAAAAAGCTCA
Downstream sequence
GAATACATTTTTCATACTTGTCAATCAGTGTATAATTAATGCTCGGAAAGTACTTTTCCAAGAAGTAGTAAATCAATTCTTTAGGTGCTAAAATTTGTCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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