Basic Information
VIS ID
TVIS30011096
Fusion event
HIV-LOC105376107 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
84788541/82173626 (Hg38)
End
84788541/82173626 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376107
Nearest miRNA
hsa-mir-101-2/Upstream/11363542; hsa-let-7a-1/Downstream/1796122;
Nearest TSS
ENST00000422679/Upstream/184838; ENST00000436084/Downstream/231562;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/483540, chr9-CpG: 137/Downstream/888474
Nearby gene
SPATA31D1(No orient, 178370)
Upstream sequence
CATGTATAATAAAAGGAAATGCATCCTCATCAGATATCTTTCATTTTTAACTTATCGAAAATAAATTCACAAAGTAAAACATTTAAGGAGTAAAAGAGGT
Downstream sequence
ATAAAATGAAAAAAACAAAAAGCCTTTTTTTTCCTACCACTTCAGGCTCCCCTTCCAATACTGAACAAATAATTATAGTTAACAATCTGTTTTCAATATC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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