Basic Information
VIS ID
TVIS30011097
Fusion event
HIV-UBQLN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
86315676/83700761 (Hg38)
End
86315676/83700761 (Hg38)
Orient
-
Location type
Intronic
Target gene
UBQLN1
miRNAs that regulate target gene
hsa-mir-210-3p ; hsa-mir-155-5p ; hsa-mir-484 ; hsa-mir-331-3p ; hsa-mir-100-5p ; hsa-mir-544a ; hsa-mir-200c-3p ; hsa-mir-136-5p ; hsa-mir-4482-3p ; hsa-mir-6514-3p ; hsa-mir-6894-3p ; hsa-mir-6811-3p ; hsa-mir-6797-3p ; hsa-mir-6076 ; hsa-mir-539-5p ; hsa-mir-570-3p ; hsa-mir-1914-5p ; hsa-mir-5584-3p ; hsa-mir-6874-3p ; hsa-mir-148b-5p ; hsa-mir-3168 ; hsa-mir-577 ; hsa-mir-4662a-3p ; hsa-mir-6771-3p
Nearest miRNA
hsa-mir-101-2/Upstream/12890677; hsa-let-7a-1/Downstream/268987;
Nearest TSS
ENST00000422679/Upstream/14708; ENST00000524818/Downstream/6833;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/77140, chr9-CpG: 101/Downstream/6341
Upstream sequence
aatgggcaaagagtgttcttgcattctaggtagcaagaacaaactgtacagaagtcctcaggcaggaaaaaaagtattaacaggtcagggaactagaagg
Downstream sequence
tcaatgtagtcagccaagcaagcaaagaaagaaggcatctgcaaaaaatggagagggcatggaaccgtattacacagggcctcgctactccattatatat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate