Basic Information
VIS ID
TVIS30011098
Fusion event
HIV-KIF27 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
86511487/83896572 (Hg38)
End
86511487/83896572 (Hg38)
Orient
+
Location type
Intronic
Target gene
KIF27
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-3606-5p ; hsa-mir-6073 ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-27b-5p ; hsa-mir-196b-5p ; hsa-mir-196a-5p ; hsa-mir-583
Nearest miRNA
hsa-mir-101-2/Upstream/13086488; hsa-let-7a-1/Downstream/73176;
Nearest TSS
ENST00000422679/Upstream/7302; ENST00000448389/Downstream/19106;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/78393, chr9-CpG: 101/Downstream/24255
Upstream sequence
agtgacagaaaaaaaatcaagtacctaaaaagaaatctataaattatttgcaatatttctgcacaaaaaaatgtaggccattactgagaaaaaataaagg
Downstream sequence
aaatctaagtaaatggagaacaataccatgcttatggattaggagactcaatcaaaatatgttcattaattctaaacatatataaatgtaatttaatgtt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate