Basic Information
VIS ID
TVIS30011099
Fusion event
HIV-LOC105379829 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
93692809/90930527 (Hg38)
End
93692809/90930527 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA9D
Target gene
LOC105379829
Nearest miRNA
hsa-mir-101-2/Upstream/906992; hsa-let-7a-1/Downstream/705724;
Nearest TSS
ENST00000422679/Upstream/103039; ENST00000563268/Downstream/34866;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/128263, chr9-CpG: 61/Downstream/186916
Nearby gene
SYK(No orient, 31967)
Upstream sequence
CAGAAGTGATAAAGAAGTGCTAAAAGTTACAGAATAGTAAGCTTTCTAAAGTCCCACTTGTGTAAAGATAAAGTAAAACAGAAGAATATGCTTGTATATA
Downstream sequence
ATTGTATATGCAAAAATATTTCCTTCTTGGGAAGCAGGGGGTGAATAGAGATTATGTTAAACTTTGACACTTAAAACCTAAAAATAACACGTTTATTGTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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