Basic Information
VIS ID
TVIS30011105
Fusion event
HIV-FRRS1L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
111893471/109131191 (Hg38)
End
111893471/109131191 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA9E
Target gene
FRRS1L
miRNAs that regulate target gene
hsa-mir-1283 ; hsa-mir-665 ; hsa-mir-501-5p ; hsa-mir-500a-5p ; hsa-mir-4423-3p ; hsa-mir-329-5p
Nearest miRNA
hsa-let-7a-1/Upstream/84893; hsa-mir-12126/Downstream/380284;
Nearest TSS
ENST00000422679/Upstream/11246; ENST00000465091/Downstream/17072;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/11193, chr9-CpG: 63/Downstream/35726
Nearby gene
FRRS1L(No orient, 6110)
Upstream sequence
TATTAAATATAAAAACAAAGAAATCTACCTTGAAACTAAATAACTGGATACTTGAATAACTGAATAAGGAACCTAATTAAATACAAAACCTGTATAGGTT
Downstream sequence
GCATCAACATGCCAGTTACTCAGCTAACACTAGTCTTGGTTTCTTAACTAACAGTATAGAAAAGTCACATTCAACAGTGGTACTTTATATGTTCTTAACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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