Basic Information
VIS ID
TVIS30011109
Fusion event
HIV-STXBP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
130420100/127657821 (Hg38)
End
130420100/127657821 (Hg38)
Orient
-
Location type
Intronic
Target gene
STXBP1
miRNAs that regulate target gene
hsa-mir-378a-3p ; hsa-mir-15b-5p ; hsa-mir-25-3p ; hsa-mir-544a
Nearest miRNA
hsa-let-7a-1/Upstream/2964023; hsa-mir-12126/Downstream/32866;
Nearest TSS
ENST00000422679/Upstream/6197; ENST00000496504/Downstream/3312;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/44306, chr9-CpG: 16/Downstream/34398
Upstream sequence
AGAGGCAAAGGACCCATTCTTGACAGAATTAGATATCATTTTCCATTTTCTCTCAGAACAGATCAATGAATTTACTTAAACTGAAATGGGAAGTGAGAAC
Downstream sequence
TATCTAGTGTGAAGATTTCAGAtttttctttgttgttgtttttgtcgttgtttttgagatggagtctcactctgtcacccaggctggagtgcagtggtac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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