VISDB Viral Integration Site DataBase

VIS ID

TVIS30011113

Fusion event

HIV-SET integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.11

Reference genome

Start

End

131454371/128692092 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-199b-5p ; hsa-mir-375 ; hsa-mir-122-5p ; hsa-mir-877-3p ; hsa-mir-505-5p ; hsa-mir-296-3p ; hsa-mir-18a-3p ; hsa-mir-484 ; hsa-mir-423-3p ; hsa-mir-378a-5p ; hsa-mir-185-5p ; hsa-mir-100-5p ; hsa-mir-93-5p ; hsa-mir-26a-5p ; hsa-mir-1260b ; hsa-mir-6832-5p ; hsa-mir-211-3p ; hsa-mir-3199 ; hsa-mir-3202 ; hsa-mir-4282 ; hsa-mir-4476 ; hsa-mir-4515 ; hsa-mir-4531 ; hsa-mir-6876-5p ; hsa-mir-8052 ; hsa-let-7f-2-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-mir-3171 ; hsa-mir-4798-5p ; hsa-mir-125b-5p ; hsa-mir-197-5p ; hsa-mir-3132 ; hsa-mir-3936 ; hsa-mir-4451 ; hsa-mir-5681a ; hsa-mir-582-5p ; hsa-mir-4328 ; hsa-mir-1324 ; hsa-mir-1200 ; hsa-mir-21-5p ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-374a-3p ; hsa-mir-6505-5p ; hsa-mir-3134 ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-4729 ; hsa-mir-1208 ; hsa-mir-6739-3p ; hsa-mir-7515 ; hsa-mir-3646 ; hsa-mir-3662 ; hsa-mir-548c-3p ; hsa-mir-4699-3p ; hsa-mir-7159-3p ; hsa-mir-766-5p ; hsa-mir-3148 ; hsa-mir-3919 ; hsa-mir-4797-5p ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-145-5p ; hsa-mir-502-3p ; hsa-mir-4668-5p ; hsa-mir-4772-3p ; hsa-mir-5008-3p ; hsa-mir-548u ; hsa-mir-6772-3p ; hsa-mir-7161-5p

Nearest miRNA

hsa-let-7a-1/Upstream/299378; hsa-mir-12126/Downstream/1177513;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/1689, chr9-CpG: 122/Downstream/10247

Nearest cancer related gene

SET(OG, No orient, 0)

Upstream sequence

TCCACAAGGTATGTTTTGGACAGGGCATTGTTAAAGGATAAACAGTGTTTGTTAGAATGGAGGAAGCTTGGTGAAGACTTAGTCCAGCATGCTGGGTTGC

Downstream sequence

GTGCAACAAAGACAggctgggtgcggtggcgcacctgtaatcccagcactttgggaggccgaggtgggtggatcacttgaggtcaggggttcgaaaccag