Basic Information
VIS ID
TVIS30011125
Fusion event
HIV-EHMT1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
140579636/137685184 (Hg38)
End
140579636/137685184 (Hg38)
Orient
-
Location type
Intronic
Target gene
EHMT1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-30e-5p ; hsa-mir-125b-5p
Nearest miRNA
hsa-let-7a-1/Upstream/235098; hsa-mir-602/Downstream/153235;
Nearest TSS
ENST00000422679/Upstream/4286; ENST00000636186/Downstream/104;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/65664, chr9-CpG: 67/Downstream/8375
Upstream sequence
aaagtatacttaacataaattttactactttagccatttctaagtgtgctattaagtggcattaagtaccttcacagtgttgcataacaaccattgtaac
Downstream sequence
cgtcatcagtctgtttccaaaacattttcatcaccccaagcagaaactctgtatccattaaacagtaacttctcttatcttcctcctcccagctcctggt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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