Basic Information
VIS ID
TVIS30011127
Fusion event
HIV-STS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.31
Reference genome
GRCh37/hg19
Start
7257074/7339033 (Hg38)
End
7257074/7339033 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRAXB
Target gene
STS
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-4662a-5p ; hsa-mir-539-5p ; hsa-mir-3651 ; hsa-mir-3976 ; hsa-mir-3925-5p ; hsa-mir-3123 ; hsa-mir-450a-2-3p ; hsa-mir-6083 ; hsa-mir-6857-5p ; hsa-mir-6763-5p ; hsa-mir-6810-5p ; hsa-mir-3150a-3p ; hsa-mir-2110 ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-3147 ; hsa-mir-4425 ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4705 ; hsa-mir-3200-5p ; hsa-mir-1264 ; hsa-mir-7848-3p ; hsa-mir-6892-3p ; hsa-mir-545-5p ; hsa-mir-624-5p ; hsa-mir-4311
Nearest miRNA
hsa-mir-3690-1/Upstream/191096; hsa-let-7f-2/Downstream/787932;
Nearest TSS
ENST00000429181/Upstream/119577; ENST00000341408/Downstream/503229;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/190586, chrX-CpG: 49/Downstream/588003
Upstream sequence
TTCATTCCAAAGGAATGTGTTCCTTTCCGGCTTTCTGAAAGATACCTTCATTTCAAGCTCAGTAAATGGTTTAAAATCAAAACCAGCTTACCGTGGTAAC
Downstream sequence
ATAAAGAAAAGTGCTCGCATGGCTCACTGTCTAGCATTTTCatttaattaaaaaattaattttGCCTCTAAAACACACCTAATAAAAGAGAAGAAATTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate