VISDB Viral Integration Site DataBase

VIS ID

TVIS30011130

Fusion event

HIV-DDX3X integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

p11.4

Reference genome

Start

End

41202934/41343681 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-421 ; hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-181a-5p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-505-5p ; hsa-mir-130b-5p ; hsa-mir-629-3p ; hsa-mir-92b-3p ; hsa-mir-99a-5p ; hsa-mir-1304-5p ; hsa-mir-106a-3p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-1224-5p ; hsa-mir-3915 ; hsa-mir-653-3p ; hsa-mir-1227-3p ; hsa-mir-3605-5p ; hsa-mir-3679-5p ; hsa-mir-1185-5p ; hsa-mir-6776-3p ; hsa-mir-455-5p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-4262 ; hsa-mir-1257 ; hsa-mir-4304 ; hsa-mir-596 ; hsa-mir-4797-5p ; hsa-mir-8066 ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-646 ; hsa-mir-545-3p ; hsa-mir-548p ; hsa-mir-548l ; hsa-mir-7844-5p ; hsa-mir-548n ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-503-5p ; hsa-mir-15a-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-4440 ; hsa-mir-5680 ; hsa-mir-651-5p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-4496 ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-129-5p ; hsa-mir-3191-5p ; hsa-mir-5585-5p ; hsa-mir-4680-3p ; hsa-mir-5187-3p ; hsa-mir-4427 ; hsa-mir-3921 ; hsa-mir-4653-5p ; hsa-mir-301b-5p ; hsa-mir-301a-5p ; hsa-mir-146a-3p ; hsa-mir-95-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-3115 ; hsa-mir-1468-3p ; hsa-mir-5571-5p ; hsa-mir-548at-5p ; hsa-mir-4465 ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-505-3p ; hsa-mir-7159-5p ; hsa-mir-6513-3p ; hsa-mir-4272 ; hsa-mir-433-5p ; hsa-mir-543 ; hsa-mir-199b-5p ; hsa-mir-199a-5p ; hsa-mir-6504-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-4282 ; hsa-mir-190a-3p ; hsa-mir-4512 ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-337-3p ; hsa-mir-202-5p ; hsa-let-7c-3p ; hsa-mir-3163 ; hsa-mir-624-3p ; hsa-mir-4999-3p ; hsa-mir-216b-3p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-1277-5p ; hsa-mir-342-3p

Nearest miRNA

hsa-mir-1587/Upstream/1506068; hsa-let-7f-2/Downstream/4402476;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/8656, chrX-CpG: 50/Downstream/98500

Nearest cancer related gene

DDX3X(TSG, No orient, 0)

Upstream sequence

cctCTTAGAGGTGGAGCAGAGAAGCCACTTTTTGGAAAACTTAAGCATAAACTAAAAGTACTAATTATTAGTAATAGGGTAGTTAAAAAACACTGTCATC

Downstream sequence

TACCAATGTCTGTTTAAAAGTAATGAGCAGGATTTGTTTGTTTGTTTTTGAACAGGGTCTGGAAAAACTGCAGCATTTCTGTTGCCCATCTTGAGTCAGA