Basic Information
VIS ID
TVIS30011133
Fusion event
HIV-ZC4H2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
64192673/64972793 (Hg38)
End
64192673/64972793 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZC4H2
miRNAs that regulate target gene
hsa-mir-152-5p ; hsa-mir-597-3p ; hsa-mir-182-3p ; hsa-mir-4539 ; hsa-mir-218-2-3p
Nearest miRNA
hsa-let-7f-2/Upstream/1186706; hsa-mir-105-1/Downstream/1046077;
Nearest TSS
ENST00000429181/Upstream/52666; ENST00000617377/Downstream/3570;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/577250, chrX-CpG: 78/Downstream/61735
Upstream sequence
ggtaataattcctatcccagatttcctttgggaagactaaagagtaaatgagccaggagcttttaaattaaaaggtgcttgacaaatgttagTTCCTTTC
Downstream sequence
TTCAGTTTCTTTGACCCTTTGCTCCTTCCTTATTTCTATCTCTCATACATGTTTATCTGTCCATATGTGAACATCAAGTATATATTTATAGTACTTTCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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