Basic Information
VIS ID
TVIS30011134
Fusion event
HIV-BCYRN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
70676905/71457055 (Hg38)
End
70676905/71457055 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
BCYRN1
Nearest miRNA
hsa-let-7f-2/Upstream/1434132; hsa-mir-105-1/Downstream/2761322;
Nearest TSS
ENST00000429181/Upstream/33077; ENST00000461157/Downstream/1218;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/89842, chrX-CpG: 80/Downstream/35144
Upstream sequence
ccgcgcccggccCAATAATGTATTTTCACTCAACTGTTTCCACCTAACTTGGATTGCATCATCTGTTCAGCTTAACACCTTATCTAAAACTGTTGACTTT
Downstream sequence
GCAGTTTTCTGCACTGTGCCGTAGGGTTTTGCAGAAATTTCATCCCCTTATTTTTCCTTTCTTCTGTTCCACATTGATTTACCTGCTCTGTAATGCTTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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