VISDB Viral Integration Site DataBase

VIS ID

TVIS30011135

Fusion event

HIV-CHIC1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

q13.2

Reference genome

Start

End

72788951/73569115 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-5092 ; hsa-mir-223-5p ; hsa-mir-4461 ; hsa-mir-4693-3p ; hsa-mir-6867-5p ; hsa-mir-4266 ; hsa-mir-4433b-3p ; hsa-mir-513a-3p ; hsa-mir-590-3p ; hsa-mir-1200 ; hsa-mir-513c-3p ; hsa-mir-3163 ; hsa-mir-4324 ; hsa-mir-4282 ; hsa-mir-3606-3p ; hsa-mir-4793-5p ; hsa-mir-548aw ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-1264 ; hsa-mir-6882-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-561-3p ; hsa-mir-4519 ; hsa-mir-6838-5p ; hsa-mir-324-5p ; hsa-mir-3680-3p ; hsa-mir-5705 ; hsa-mir-5739 ; hsa-mir-5091 ; hsa-mir-6719-3p ; hsa-mir-4526 ; hsa-mir-6730-3p ; hsa-mir-3660 ; hsa-mir-544b ; hsa-mir-3200-5p ; hsa-mir-651-5p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p

Nearest miRNA

hsa-let-7f-2/Upstream/3546192; hsa-mir-105-1/Downstream/649262;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/5786, chrX-CpG: 41/Downstream/536214

Nearest cancer related gene

CHIC1(OG, No orient, 0)

Upstream sequence

TAGTGTGGAAAGACATTTTTCCCATATGAAATATTAAAGAGATTTAACTAGAATCTTTTAAAAATCTCCTTTTGTTTTGTGGCATAGCCTTTTCCTTGGT

Downstream sequence

GTAGCAAATAGAGTTCAGTGCACATGCTTCAGAATCAGTATTCCTATAAGTGCATGGTTTTCTAGTGAAGTCATGTCTTATTGGCAGAATTTTACGACAT