Basic Information
VIS ID
TVIS30011139
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
129670990/130537016 (Hg38)
End
129670990/130537016 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/9165963; hsa-mir-105-1/Downstream/3632362;
Nearest TSS
ENST00000429181/Upstream/125813; ENST00000423277/Downstream/130685;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/134817, chrX-CpG: 37/Downstream/365757
Nearby gene
FAM45BP(No orient, 39569)
Upstream sequence
tggatttatgcaaattatactggaatccaaactaaccacacctgtgcctggttacgagctccctcctcaggagtttaacagaaactgggttcttcttttc
Downstream sequence
atgtggacccaacctgtttctagccttgcttattcagtggaaaggcacgtgcactatagttgcagccatacctggattgcatataaatatatatgtaatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate