Basic Information
VIS ID
TVIS30011142
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q27.1
Reference genome
GRCh37/hg19
Start
138805005/139722846 (Hg38)
End
138805005/139722846 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/1055053; hsa-mir-105-1/Downstream/201302;
Nearest TSS
ENST00000429181/Upstream/14619; ENST00000417426/Downstream/22945;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/30332, chrX-CpG: 154/Downstream/208857
Nearby gene
ATP11C(No orient, 3500)
Upstream sequence
AATTAATATTGCAGCTTTTTTTCCAGAGCCTGGTGAATTATTCTTGAATTTTGAATATGATGTATGTGAATTTCATTTATCTATGAAATGATATGCTAAC
Downstream sequence
TCCTTTATTTAGGTCTTTTTTAATGCTAAGTGTCTTTATTACTAATTAAGAAGGCTGATTATACAAGGACCCTCTATTTCCATTAATTCAAGCATCCATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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