Basic Information
VIS ID
TVIS30011145
Fusion event
HIV-ARHGAP4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
153177757/153912303 (Hg38)
End
153177757/153912303 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRAXE ; FRAXF
Target gene
ARHGAP4
Nearest miRNA
hsa-let-7f-2/Upstream/576766; hsa-mir-1184-1/Downstream/68794;
Nearest TSS
ENST00000429181/Upstream/1202; ENST00000438219/Downstream/434;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/25538, chrX-CpG: 46/Downstream/13712
Upstream sequence
tagagacggggtttcaccatgttgcccaggctggtctcgaacacctgggctgaagggatctgcccacctcagcctcccaaagagctgggattacaggtgt
Downstream sequence
gagccaccgtgcctggccCCCTCTGATGctttctgatctcagtattagttttctgatctttcttgcttccccttatttcactgtccaggacccccagtac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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