Basic Information
VIS ID
TVIS30011152
Fusion event
HIV-LOC100996583 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.32
Reference genome
GRCh37/hg19
Start
2510353/2578914 (Hg38)
End
2510353/2578914 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA1A
Target gene
LOC100996583
Nearest miRNA
hsa-mir-12136/Upstream/1239206; hsa-mir-101-1/Downstream/549061;
Nearest TSS
ENST00000473358/Upstream/17113; ENST00000424215/Downstream/2646;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/31990, chr1-CpG: 140/Downstream/7044
Upstream sequence
aacaaacaaacaaacaaacaaaACactctaaaaccctcaaaggaaaacacaagcctcttgatgttagacttggtagtgatttcttgatttcttgggtatg
Downstream sequence
acaggaaaaggacaggcagaaacgtgtaaaatagatacatggggctttacaaacaagaatgaatagaatgaaaggcaacacatggactgggaggaaatgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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