Basic Information
VIS ID
TVIS30011153
Fusion event
HIV-CAMTA1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.31
Reference genome
GRCh37/hg19
Start
6882091/6822031 (Hg38)
End
6882091/6822031 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
CAMTA1
miRNAs that regulate target gene
hsa-mir-129-5p ; hsa-mir-155-5p ; hsa-mir-218-5p ; hsa-mir-34a-5p ; hsa-mir-96-5p ; hsa-mir-124-3p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p
Nearest miRNA
hsa-mir-12136/Upstream/392135; hsa-mir-101-1/Downstream/2044471;
Nearest TSS
ENST00000473358/Upstream/15043; ENST00000472283/Downstream/3079;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/35725, chr1-CpG: 23/Downstream/139910
Nearest cancer related gene
CAMTA1(TSG, No orient, 0)
Upstream sequence
CTTTAGAATTAGAGTTGTCAGTCAAGCAAATCATCTGTCATTTTCAAGAGCCTCACTAGTTATTTTTTTATTGTGAAGTAGGTTAGAAAATTATTTTGTA
Downstream sequence
AAGTCTAATACCATACACATATATTTTGTTAGATAATGATAATGAAGTGTTTTACTGTCATTTGGTTGACACTCCCACTTTTCAGTGTCAAAGTTCAACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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