VISDB Viral Integration Site DataBase

VIS ID

TVIS30011165

Fusion event

HIV-TARDBP integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.22

Reference genome

Start

End

11083408/11023351 (Hg38)

Orient

+

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-192-5p ; hsa-mir-1229-3p ; hsa-mir-93-3p ; hsa-mir-125b-5p ; hsa-mir-15b-5p ; hsa-mir-1260b ; hsa-mir-583 ; hsa-mir-1276 ; hsa-mir-4311 ; hsa-mir-7846-3p ; hsa-mir-548c-3p ; hsa-mir-4282 ; hsa-mir-1302 ; hsa-mir-4298 ; hsa-mir-8485 ; hsa-mir-513a-5p ; hsa-mir-4278 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-6732-5p ; hsa-mir-6805-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-7153-3p ; hsa-mir-4778-3p ; hsa-mir-4698 ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-3919 ; hsa-mir-3613-3p ; hsa-mir-3123 ; hsa-mir-3529-3p ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-548n ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-4742-3p ; hsa-mir-877-3p

Nearest miRNA

hsa-mir-12136/Upstream/1055893; hsa-mir-101-1/Downstream/1005807;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/10163, chr1-CpG: 146/Downstream/35622

Upstream sequence

TTCTGCCATAGGAATACTGTCTACATGCTTTCTCATTCAAGAATTCGTCATCACGCATCACAGGCCGCGTCTTTGACGGTGGGTGTCCCATTTTTATCCG

Downstream sequence

CTACTCTTTATTTCATGGAGTCGTATCAACGCTATGAACGCAAGGCTGTGATATGGAACCAGAAGGCTGTCTGAACTTTTGAAACCTTGTGTGGGATTGA