Basic Information
VIS ID
TVIS30011175
Fusion event
HIV-HP1BP3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.12
Reference genome
GRCh37/hg19
Start
21091104/20764611 (Hg38)
End
21091104/20764611 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
HP1BP3
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-193b-3p ; hsa-mir-29b-3p ; hsa-mir-382-3p ; hsa-mir-218-5p ; hsa-mir-7703 ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-4486 ; hsa-mir-4793-3p ; hsa-mir-1273g-3p ; hsa-mir-1228-3p ; hsa-mir-6757-3p ; hsa-mir-1273e ; hsa-mir-219b-3p ; hsa-mir-25-3p ; hsa-mir-302f ; hsa-mir-3160-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-3689d ; hsa-mir-377-5p ; hsa-mir-4459 ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-500a-3p ; hsa-mir-5186 ; hsa-mir-558 ; hsa-mir-6086 ; hsa-mir-6134 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6840-3p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-767-5p ; hsa-mir-7847-3p ; hsa-mir-92a-3p ; hsa-mir-92b-3p
Nearest miRNA
hsa-mir-12136/Upstream/130823; hsa-mir-101-1/Downstream/223703;
Nearest TSS
ENST00000473358/Upstream/14360; ENST00000416959/Downstream/10394;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/31738, chr1-CpG: 175/Downstream/21604
Upstream sequence
tttttTTTTTGTTTTTTTTCTTTTAAACCTGGTAGAGTAACTCTTTTAATGTTGTCAACTGTTAAGATATTTCATATCTGAGAAGATACACAGTTCAATA
Downstream sequence
CTACATATCTTAACAGCTGACAACATTTAAAAGAGTTACTCTACCAGGATCTTACAAAGAAAGATAAGATTTGGGTTTGGAAAAAAAAAAAAAAAAACCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate