VISDB Viral Integration Site DataBase

VIS ID

TVIS30011187

Fusion event

HIV-SRSF10 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.11

Reference genome

Start

End

24292119/23965629 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-29c-3p ; hsa-mir-148b-3p ; hsa-mir-183-5p ; hsa-mir-99a-5p ; hsa-mir-218-5p ; hsa-mir-1303 ; hsa-mir-5096 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-5587-5p ; hsa-mir-6801-5p ; hsa-mir-193b-5p ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-483-5p ; hsa-mir-4446-5p ; hsa-mir-3679-3p ; hsa-mir-4724-3p ; hsa-mir-6831-3p ; hsa-mir-501-5p ; hsa-mir-500a-5p ; hsa-mir-7855-5p ; hsa-mir-4666a-5p ; hsa-mir-4495 ; hsa-mir-5002-5p ; hsa-mir-34c-3p ; hsa-mir-34b-3p ; hsa-mir-551b-5p ; hsa-mir-548l ; hsa-mir-548n ; hsa-mir-493-5p ; hsa-mir-6885-3p ; hsa-mir-4775 ; hsa-mir-4720-3p ; hsa-mir-4804-3p ; hsa-mir-3120-3p ; hsa-mir-32-3p ; hsa-mir-6773-5p ; hsa-mir-6724-5p ; hsa-mir-296-5p ; hsa-mir-1273f ; hsa-mir-6770-5p ; hsa-mir-1253 ; hsa-mir-5197-3p

Nearest miRNA

hsa-mir-12136/Upstream/36482; hsa-mir-101-1/Downstream/953716;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/5418, chr1-CpG: 80/Downstream/14244

Upstream sequence

atctgtaaaatgggaataatacccatttcccaggagtgtttttaggattaaatagaaatatttgaaaagcacatggttcggcacagtaagtgctcaataa

Downstream sequence

TATTGACAGCATTCAGTATAGAGAGAAACAACCACAGAAGAGATCCTAAAGCAATTCATTCAACAGATGCAAAAATTAAAGGGCCTTTTCTGATTTACCA