Basic Information
VIS ID
TVIS30011189
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.11
Reference genome
GRCh37/hg19
Start
24967260/24640769 (Hg38)
End
24967260/24640769 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/711622; hsa-mir-101-1/Downstream/278576;
Nearest TSS
ENST00000473358/Upstream/7703; ENST00000466910/Downstream/462;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/84472, chr1-CpG: 126/Downstream/1767
Nearby gene
SRRM1(No orient, 2334)
Upstream sequence
catcgagtaaaaactttaaagTAAAAACTTTGCCCAggccgggcacggtggctcacgcctataatcccagcactttaggaggccaaggcaggtggatcac
Downstream sequence
gaggtcaggagtcccagaccagcctggctaacatggtgaaaccccatctccactaaagataaaaaaagtagccggacttggtggcgggcgtctgtaatcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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