Basic Information
VIS ID
TVIS30011196
Fusion event
HIV-CEP85 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.11
Reference genome
GRCh37/hg19
Start
26572830/26246339 (Hg38)
End
26572830/26246339 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
CEP85
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-671-5p ; hsa-mir-92a-3p ; hsa-mir-25-3p
Nearest miRNA
hsa-mir-12136/Upstream/339885; hsa-mir-101-1/Downstream/308203;
Nearest TSS
ENST00000473358/Upstream/6555; ENST00000480446/Downstream/8239;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/11802, chr1-CpG: 67/Downstream/33532
Upstream sequence
ttagatatatacccaggagaaatgaatacacaagtttttgtgtggacttgtacataaatgttggtagcagcattattcatgatagtcaaaagtagaaaca
Downstream sequence
atccaaaacccacaactgatgaatgaatgaatatccatataatacagtagaatattattcagcaataaaaagaaatgaaatactggtacatgctacCTTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate