Basic Information
VIS ID
TVIS30011205
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.11
Reference genome
GRCh37/hg19
Start
27199786/26873295 (Hg38)
End
27199786/26873295 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/318702; hsa-mir-101-1/Downstream/3865861;
Nearest TSS
ENST00000473358/Upstream/10157; ENST00000448791/Downstream/2838;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/7809, chr1-CpG: 93/Downstream/16375
Nearby gene
GPN2(No orient, 6087)
Upstream sequence
gctactagggaggctgaggcaggagaattgcttgaatctgggaggcagaggttgcagtgagctgagatagatagcatcacagcactccagcctgggtgac
Downstream sequence
acagcacaacttggcctaaaaaaaaaaaaaaaaaaTCCAGGACTCGAAAAGCATCATGTCTTCAAATCGGTGGGGCTAGATACAGCATTGAATACATATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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