VISDB Viral Integration Site DataBase

VIS ID

TVIS30011227

Fusion event

HIV-PTP4A2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p35.2

Reference genome

Start

End

32397602/31932001 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-145-5p ; hsa-mir-124-3p ; hsa-mir-7-5p ; hsa-mir-1296-5p ; hsa-mir-320b ; hsa-mir-877-5p ; hsa-mir-296-3p ; hsa-mir-615-3p ; hsa-mir-331-3p ; hsa-mir-106b-5p ; hsa-mir-320a ; hsa-mir-183-5p ; hsa-mir-92a-3p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-mir-6776-3p ; hsa-mir-3065-5p ; hsa-mir-619-3p ; hsa-mir-875-3p ; hsa-mir-6887-3p ; hsa-mir-218-5p ; hsa-mir-580-3p ; hsa-mir-6770-5p ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-5197-3p ; hsa-mir-483-3p ; hsa-mir-382-5p ; hsa-mir-495-5p ; hsa-mir-6124 ; hsa-mir-190a-3p ; hsa-mir-6765-3p ; hsa-mir-5011-5p ; hsa-mir-656-3p ; hsa-mir-1277-5p ; hsa-mir-6890-3p ; hsa-mir-34c-3p ; hsa-mir-3074-3p ; hsa-mir-3148 ; hsa-mir-362-3p ; hsa-mir-4640-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-3529-3p ; hsa-mir-8064 ; hsa-mir-4789-3p

Nearest miRNA

hsa-mir-12136/Upstream/173266; hsa-mir-101-1/Downstream/154948;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/142594, chr1-CpG: 82/Downstream/5680

Nearest cancer related gene

PTP4A2(OG, No orient, 0)

Upstream sequence

AATGGAAAATACAATACACAACAATTTGTTCTGCTACTAAAAACAACAAATATCAACATTTGTATATAAATCCAATTTACAAATACTGTGGTGATACAAC

Downstream sequence

CTAGTGAATGTTTCCTGTAAAACGGTGGGGAAAATAAAAAGTTGGTCAAATTTAAACAAAAACTAAAGGACAACTGGAAGAAAACAGACCTGATTGTGAA