VISDB Viral Integration Site DataBase

VIS ID

TVIS30011240

Fusion event

HIV-MEAF6 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.3

Reference genome

Start

End

37958735/37493134 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-10a-5p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-3163 ; hsa-mir-1277-5p ; hsa-mir-5692a ; hsa-mir-5698 ; hsa-mir-183-5p ; hsa-mir-891a-3p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-6787-3p ; hsa-mir-5693 ; hsa-mir-1285-5p ; hsa-mir-4665-3p ; hsa-mir-378a-5p ; hsa-mir-4454 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-5096 ; hsa-mir-1248 ; hsa-mir-5088-3p ; hsa-mir-4289 ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-382-3p ; hsa-mir-5572 ; hsa-mir-4260 ; hsa-mir-450a-2-3p ; hsa-mir-6803-5p ; hsa-mir-7109-5p ; hsa-mir-6751-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-3972 ; hsa-mir-1202 ; hsa-mir-6864-5p ; hsa-mir-6126 ; hsa-mir-127-5p ; hsa-mir-526b-5p ; hsa-mir-138-5p ; hsa-mir-3194-5p ; hsa-mir-7515 ; hsa-mir-3179 ; hsa-mir-6806-3p ; hsa-mir-3928-5p ; hsa-mir-4635 ; hsa-mir-548q ; hsa-mir-4328 ; hsa-mir-1245b-3p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-5683 ; hsa-mir-320e ; hsa-mir-1294 ; hsa-mir-3154 ; hsa-mir-3919 ; hsa-mir-4316 ; hsa-mir-4756-3p ; hsa-mir-5088-5p ; hsa-mir-6132 ; hsa-mir-6510-5p ; hsa-mir-6770-5p ; hsa-mir-6801-5p ; hsa-mir-6822-3p ; hsa-mir-6828-5p ; hsa-mir-6836-5p ; hsa-mir-6844 ; hsa-mir-758-3p ; hsa-mir-9500

Nearest miRNA

hsa-mir-12136/Upstream/12845; hsa-mir-101-1/Downstream/7801;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/18514, chr1-CpG: 71/Downstream/21177

Upstream sequence

ATTCCTCAGCCCCAACAAGCCCTCCAAGAAAGGGAGACCTGGTGGGCAACACTGGCTCTCACTGATGCTATCCTTTCACTCCACTTAAGAACGACATAAG

Downstream sequence

TTATCACTTTTGGTATAATTTTGAGACTTTCCATATGCCATGGTGATTTTTAGAGCAATATTTAATCAGGTGAATACCAGCAAAGAGAGAAAATACAGAA