Basic Information
VIS ID
TVIS30011241
Fusion event
HIV-LOC105378658 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
38985778/38520106 (Hg38)
End
38985778/38520106 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105378658
Nearest miRNA
hsa-mir-12136/Upstream/430777; hsa-mir-101-1/Downstream/2234249;
Nearest TSS
ENST00000473358/Upstream/44910; ENST00000456813/Downstream/254402;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/472136, chr1-CpG: 42/Downstream/58387
Nearby gene
LINC01343(No orient, 305339)
Upstream sequence
ACAAGTGTGGATGAGAGTGGGTTAGAGCAGAGTTGGGATGATCTGGGAGATGTATTGCAAGTCTTCTATCACATATAATAGTTAAAAGACCAGAGAGGAT
Downstream sequence
GTACTTATTTTAATACATTAGAGTGGATTCAAGGTTATGCTTACAATAGCACCACACTCATTCACTTGCATTCTAATGGTTTTATTGTACATTAGGAATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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