Basic Information
VIS ID
TVIS30011244
Fusion event
HIV-TRIT1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.2
Reference genome
GRCh37/hg19
Start
40326079/39860407 (Hg38)
End
40326079/39860407 (Hg38)
Orient
+
Location type
Intronic
Target gene
TRIT1
miRNAs that regulate target gene
hsa-mir-183-5p ; hsa-mir-3615
Nearest miRNA
hsa-mir-12136/Upstream/1771078; hsa-mir-101-1/Downstream/893948;
Nearest TSS
ENST00000473358/Upstream/2999; ENST00000418255/Downstream/23027;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/70907, chr1-CpG: 33/Downstream/22862
Nearest cancer related gene
TRIT1(TSG, No orient, 0)
Upstream sequence
AGATGTGGGTGATACAGACTAGACATCTGATTTACATATAATATGGTTTTATGGGTATGTTTTATAGTCGTTAACTAAAtctaaaactgaaaacttctga
Downstream sequence
gcaccaaacacacaactcggaggaaacgctcactggagtattttggattttagattttcagatttgggatgctcaattggtaaatataatgcaaatatta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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