Basic Information
VIS ID
TVIS30011253
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.2
Reference genome
GRCh37/hg19
Start
43628946/43163275 (Hg38)
End
43628946/43163275 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/2405903; hsa-mir-101-1/Downstream/8377;
Nearest TSS
ENST00000473358/Upstream/10517; ENST00000525227/Downstream/7846;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/15104, chr1-CpG: 45/Downstream/8557
Nearby gene
EBNA1BP2(No orient, 899)
Upstream sequence
caaaaaaattaaaactataatcatattctgagagatataagatactgcatctagaggataagagtaaaatgatatgaaaaatgaccaaatagagaataag
Downstream sequence
aaactcttgggggataaatgaaatgaaagctaaacttcatattcaataaaatgattttaggccgggcatggtggctcacgcctgtaatcccagcactttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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