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TVIS30011254
Basic Information
VIS ID
TVIS30011254
Fusion event
HIV-EFCAB14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
47158619/46692947 (Hg38)
End
47158619/46692947 (Hg38)
Orient
-
Location type
Intronic
Target gene
EFCAB14
miRNAs that regulate target gene
hsa-mir-374b-5p
;
hsa-mir-590-3p
;
hsa-mir-130b-3p
;
hsa-mir-106b-5p
;
hsa-mir-9-5p
;
hsa-mir-93-5p
;
hsa-mir-615-3p
;
hsa-mir-149-5p
;
hsa-let-7b-5p
;
hsa-mir-3163
;
hsa-mir-32-3p
;
hsa-mir-6826-3p
;
hsa-mir-7856-5p
;
hsa-mir-20a-5p
;
hsa-mir-4477b
;
hsa-mir-5047
;
hsa-mir-1301-3p
;
hsa-mir-340-5p
;
hsa-mir-3944-5p
;
hsa-mir-4660
;
hsa-mir-4735-5p
;
hsa-mir-519c-3p
;
hsa-mir-519b-3p
;
hsa-mir-519a-3p
;
hsa-mir-3910
;
hsa-mir-3714
;
hsa-mir-4796-3p
;
hsa-mir-548ah-5p
;
hsa-mir-3609
;
hsa-mir-548t-5p
;
hsa-mir-548az-5p
;
hsa-mir-548n
;
hsa-mir-5590-3p
;
hsa-mir-142-5p
;
hsa-mir-506-3p
;
hsa-mir-124-3p
;
hsa-mir-526b-3p
;
hsa-mir-519d-3p
;
hsa-mir-20b-5p
;
hsa-mir-106a-5p
;
hsa-mir-17-5p
;
hsa-mir-4446-5p
;
hsa-mir-3674
;
hsa-mir-3679-3p
;
hsa-mir-498
;
hsa-mir-4465
;
hsa-mir-26b-5p
;
hsa-mir-26a-5p
;
hsa-mir-1297
;
hsa-mir-4703-3p
;
hsa-mir-6756-3p
;
hsa-mir-3127-3p
;
hsa-mir-5001-3p
;
hsa-mir-4711-3p
;
hsa-mir-6740-3p
;
hsa-mir-4424
;
hsa-mir-676-5p
;
hsa-mir-520h
;
hsa-mir-520g-3p
;
hsa-mir-3973
;
hsa-mir-4735-3p
;
hsa-mir-4686
;
hsa-mir-18b-5p
;
hsa-mir-6507-5p
;
hsa-mir-18a-5p
;
hsa-mir-548l
;
hsa-mir-181c-5p
;
hsa-mir-181d-5p
;
hsa-mir-181b-5p
;
hsa-mir-181a-5p
Nearest miRNA
hsa-mir-12136/Upstream/2147395; hsa-mir-101-1/Downstream/4366890;
Nearest TSS
ENST00000473358/Upstream/3256;
ENST00000413093/Downstream/3649;
Nearest CpG islands
None/Target,
chr1-CpG: 111/Upstream/24224
,
chr1-CpG: 64/Downstream/25783
Upstream sequence
AATGATTTTTCCTAGAGGAAAACCAAATCTTCCCTAAAGAAAAAATATTAGTTTATAAATCTGGAACCCAGGGATAAGGTTCTCTCACAAACTGCCTCTG
Downstream sequence
TCAATCCCTGCTGTGGGAAGGCAGATGGCCGAGCTAACACAGTAGACTGCCACTTGTTAGGAGCAAAGGACACTTCGAGCAAAAGTGGGAGGGAACCATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Resting CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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