Basic Information
VIS ID
TVIS30011256
Fusion event
HIV-SKINT1L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
48615061/48149389 (Hg38)
End
48615061/48149389 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
SKINT1L
Nearest miRNA
hsa-mir-12136/Upstream/3603837; hsa-mir-101-1/Downstream/2910448;
Nearest TSS
ENST00000473358/Upstream/67193; ENST00000431986/Downstream/23583;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/151460, chr1-CpG: 67/Downstream/322243
Upstream sequence
ttcctctgcatattgatatttggtttttaagagagtgtccttttgccagtgtatgttcttggtgcttttgtcaaaaatcagttggctgtatgtaagtaga
Downstream sequence
cttatttctgagttttctgttctgttccattggtcaatgtgtatatttttatcccagtaccatgctgttttggttattatatccttgtaatatattttga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate