Basic Information
VIS ID
TVIS30011257
Fusion event
HIV-AGBL4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
49075225/48609553 (Hg38)
End
49075225/48609553 (Hg38)
Orient
+
Location type
Intronic
Target gene
AGBL4
Nearest miRNA
hsa-mir-12136/Upstream/4064001; hsa-mir-101-1/Downstream/2450284;
Nearest TSS
ENST00000473358/Upstream/137345; ENST00000456002/Downstream/53691;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/137154, chr1-CpG: 69/Downstream/166966
Upstream sequence
ctctcttgccaaggctggagtgcaggggaaccatcacagctcactgcagccttgacctcctgggctcaaacaatcctcccacctcagccttataagtagc
Downstream sequence
ttggacctataggcacatgccaccgcacccagataatttttgtattttttgtacagatagggtattgctatgttgcctaggctggtcttgaactcctagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate