Basic Information
VIS ID
TVIS30011258
Fusion event
HIV-AGBL4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
49958089/49492417 (Hg38)
End
49958089/49492417 (Hg38)
Orient
-
Location type
Intronic
Target gene
AGBL4
Nearest miRNA
hsa-mir-12136/Upstream/4946865; hsa-mir-101-1/Downstream/1567420;
Nearest TSS
ENST00000473358/Upstream/235006; ENST00000494555/Downstream/359101;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/593176, chr1-CpG: 34/Downstream/531328
Upstream sequence
atgggctgattgatgttctgggcaggacagatgaggggcagctattcagaacagcttgaaatttaaaacttatgaattgtttacttttgaaattttccac
Downstream sequence
ttaatatttctaaaccccacttgactgtgggtaactgaaactgtgaaaagcaaaactgttgataaggggggactactgTATTGCTTTCTAATCAAAACAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate