VISDB Viral Integration Site DataBase

VIS ID

TVIS30011260

Fusion event

HIV-ZFYVE9 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p32.3

Reference genome

Start

End

52617022/52151350 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-615-3p ; hsa-mir-222-3p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-130a-3p ; hsa-mir-106b-5p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-580-5p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-1225-5p ; hsa-mir-1229-5p ; hsa-mir-4295 ; hsa-mir-4328 ; hsa-mir-3666 ; hsa-mir-5002-3p ; hsa-mir-141-5p ; hsa-mir-145-5p ; hsa-mir-5195-3p ; hsa-mir-4643 ; hsa-mir-526b-5p ; hsa-mir-591 ; hsa-mir-6758-5p ; hsa-mir-6856-5p ; hsa-mir-4684-3p ; hsa-mir-503-3p ; hsa-mir-367-5p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-4755-3p ; hsa-mir-4753-5p ; hsa-mir-6768-3p

Nearest miRNA

hsa-mir-12136/Upstream/314948; hsa-mir-101-1/Downstream/1902729;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/8518, chr1-CpG: 72/Downstream/214381

Upstream sequence

CCTGTAgtgtgccatctttctggtaagtgtttcacatatgttatttgtaactcttactaaggatattataaggtcattatattattatgcattttacagc

Downstream sequence

tgagggaactgaggcttggagagttttattgattttcctaagcttaagcccacattgatgattcaaacttatatatcaagctcatatatctctgactaga