Basic Information
VIS ID
TVIS30011261
Fusion event
HIV-TUT4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p32.3
Reference genome
GRCh37/hg19
Start
52953169/52487497 (Hg38)
End
52953169/52487497 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
TUT4
miRNAs that regulate target gene
hsa-mir-196a-5p ; hsa-let-7b-5p ; hsa-mir-26a-5p ; hsa-mir-4791 ; hsa-mir-3201 ; hsa-mir-203a-3p ; hsa-mir-216b-5p
Nearest miRNA
hsa-mir-12136/Upstream/651095; hsa-mir-101-1/Downstream/1566582;
Nearest TSS
ENST00000473358/Upstream/19007; ENST00000607321/Downstream/38433;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/82864, chr1-CpG: 115/Downstream/65089
Upstream sequence
gccgtgatcgctcactccagcactaggtgacagagacctcatctcaaaaaacaaaaaaaaaCTTAGTAAAAAAAACCATACCTGGAATTGGTTTACTCCA
Downstream sequence
TTCCATACACTGATTTCCTATAGTATGCTAGGCATAGAGTATAAGATAAATGAGAGGAAGTAGTCACCCTCCCTCAACCTATTTTACTGCCTCCACTCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate