Basic Information
VIS ID
TVIS30011270
Fusion event
HIV-GNG12-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
GRCh37/hg19
Start
68299519/67833836 (Hg38)
End
68299519/67833836 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA1L
Target gene
GNG12-AS1
Nearest miRNA
hsa-mir-101-1/Upstream/1205319; hsa-mir-11399/Downstream/349682;
Nearest TSS
ENST00000473358/Upstream/369; ENST00000414904/Downstream/121569;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/68, chr1-CpG: 30/Downstream/213124
Upstream sequence
CTCGCAAGTTTCCTTCGCGTGCGAACGCCTCGCTTGCCCCTGTGCCAGCGGTCCCCAGGGCTGTGAGGATGAGCGCTGCCAAACCCCTACACGAAAGTTT
Downstream sequence
GGTTCTGTTCCAGAAACTATGGAGGAAAACACGCATAGTAACATTTAAAGGGCCCTGGGGCCACGGAGAGAAGTTTCCCAGAAAGTGGAGGTATAACTGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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