Basic Information
VIS ID
TVIS30011277
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
89679599/89213916 (Hg38)
End
89679599/89213916 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1D
Nearest miRNA
hsa-mir-101-1/Upstream/2856229; hsa-mir-11399/Downstream/4632916;
Nearest TSS
ENST00000473358/Upstream/14984; ENST00000437128/Downstream/46666;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/220995, chr1-CpG: 114/Downstream/310335
Nearby gene
GBP4(No orient, 14966)
Upstream sequence
tttgtttgccttttgagtaaaactacagaagaaaaaaatggtgggagaaacacagatttagttggcctcatgctgtctttcttgggtcttattgtttagg
Downstream sequence
aaactgagtctcctatcaaagagaaaacatttttgtatcataattttggcaaaatgaatgactgttttatggtatcttgtgatcctattttgtgatatca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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