Basic Information
VIS ID
TVIS30011279
Fusion event
HIV-LOC100421401 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
89765545/89299862 (Hg38)
End
89765545/89299862 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1D
Target gene
LOC100421401
Nearest miRNA
hsa-mir-101-1/Upstream/2942175; hsa-mir-11399/Downstream/4546970;
Nearest TSS
ENST00000473358/Upstream/27058; ENST00000370456/Downstream/64196;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/306941, chr1-CpG: 114/Downstream/224389
Nearby gene
LOC729930(No orient, 9500)
Upstream sequence
acaaaataccttagagtggataaattataaacaatgagtgtacttgctccacagcactgcaggTGACTGTGCTCAGTACTAACTAGTTCTCCGTAGCTGC
Downstream sequence
CAACTCACCCTTGCTCTGTTTCCTCCCTCTAAGGTTTTGCTTCTAATTTATAAACACTGAAAACAAACTAAGAATGTTAATCATTCCCAGAAAGGAAATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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