VISDB Viral Integration Site DataBase

VIS ID

TVIS30011281

Fusion event

HIV-ZNF644 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p22.2

Reference genome

Start

End

91413428/90947871 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-34a-5p ; hsa-mir-19b-3p ; hsa-let-7d-5p ; hsa-mir-16-5p ; hsa-let-7a-5p ; hsa-mir-647 ; hsa-mir-4477a ; hsa-mir-6762-3p ; hsa-mir-604 ; hsa-mir-4716-5p ; hsa-mir-4709-5p ; hsa-mir-889-5p ; hsa-mir-7151-5p ; hsa-mir-5197-5p ; hsa-mir-19a-3p ; hsa-mir-653-3p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-3924 ; hsa-mir-1294 ; hsa-mir-548au-3p ; hsa-mir-202-3p ; hsa-mir-5684 ; hsa-mir-6868-5p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-98-5p ; hsa-let-7i-5p ; hsa-let-7f-5p ; hsa-mir-4458 ; hsa-let-7e-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-mir-4500 ; hsa-let-7g-5p ; hsa-mir-8081 ; hsa-mir-3157-3p ; hsa-mir-6869-5p ; hsa-mir-18b-3p ; hsa-mir-3145-3p ; hsa-mir-4735-5p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-155-5p ; hsa-mir-365a-3p ; hsa-mir-365b-3p ; hsa-mir-6867-3p ; hsa-mir-4436b-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-1470 ; hsa-mir-4667-3p ; hsa-mir-4762-5p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p

Nearest miRNA

hsa-mir-101-1/Upstream/4590184; hsa-mir-11399/Downstream/2898961;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/53865, chr1-CpG: 78/Downstream/73730

Upstream sequence

tgaaaatgcatttaatacatctaaactattgaacattgtagcttagcctacttatacatacttacattagcctacaattggccaaaataatctgacacag

Downstream sequence

tctataaaaattttataataataaaagataagattaaaaatacagtctctactgaatgcacattgcttctacaccatcgcaaaattgaatcattgtcatt