VISDB Viral Integration Site DataBase

VIS ID

TVIS30011282

Fusion event

HIV-EVI5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p22.1

Reference genome

Start

End

93053591/92588034 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-96-5p ; hsa-mir-182-5p ; hsa-mir-3607-3p ; hsa-mir-4470 ; hsa-mir-194-3p ; hsa-mir-5094 ; hsa-mir-5693 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-3714 ; hsa-mir-577 ; hsa-mir-551b-5p ; hsa-mir-548an ; hsa-mir-1271-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-1277-5p ; hsa-mir-5580-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-493-5p ; hsa-mir-494-3p ; hsa-mir-944 ; hsa-mir-665 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6765-5p ; hsa-mir-7977 ; hsa-mir-3165 ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-3656 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-6087 ; hsa-mir-3197 ; hsa-mir-4649-3p ; hsa-mir-383-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-135b-5p ; hsa-mir-1247-3p ; hsa-mir-1255b-2-3p ; hsa-mir-126-3p ; hsa-mir-3689d ; hsa-mir-377-5p ; hsa-mir-455-3p ; hsa-mir-487b-3p ; hsa-mir-6086 ; hsa-mir-6134 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6807-5p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-7847-3p

Nearest miRNA

hsa-mir-101-1/Upstream/6230347; hsa-mir-11399/Downstream/1258798;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/100982, chr1-CpG: 105/Downstream/196347

Nearest cancer related gene

EVI5(OG, No orient, 0)

Upstream sequence

ATACTAGAAGGCTTGGGTTTAATTCTCACCTATTTTCCTTAACTAACTGAGGAAAAAATTGACTTTTCTATGTTTTGTTCTACTCCATGGAATTTAGAGA

Downstream sequence

TAGCTCCATTTAGTATTAATGTAAAAATAAAGTCTTCAAATAATAAATAGCATTTAGATGGTGGAAAACTCCAGTAATAAGAGGAAACTTAATTTTTTAA