Basic Information
VIS ID
TVIS30011284
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
97470284/97004728 (Hg38)
End
97470284/97004728 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1M
Nearest miRNA
hsa-mir-101-1/Upstream/2460949; hsa-mir-11399/Downstream/1040514;
Nearest TSS
ENST00000473358/Upstream/197917; ENST00000629811/Downstream/91195;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/282465, chr1-CpG: 47/Downstream/915905
Nearby gene
DPYD(No orient, 73016)
Upstream sequence
AGGAAAGTCCCATTCTTTTGTAGCTTCATGGTTTAATATGAACGCATGAGAAGGGATGACATTAAAGGTCTTTTGCCTCTGGTTGAACACTAACAAAAGC
Downstream sequence
CACTTACCTTCTACTGTTTTTCCCAATAGCTTATTTATGATCTAGGCCTGAATATCCTTCCACCTGTCTATTGGGGTTTTCACCATCCTTGTGTCATGTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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