Basic Information
VIS ID
TVIS30011285
Fusion event
HIV-MIR137HG integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
98486030/98020474 (Hg38)
End
98486030/98020474 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA1M
Target gene
MIR137HG
Nearest miRNA
hsa-mir-101-1/Upstream/3476695; hsa-mir-11399/Downstream/24768;
Nearest TSS
ENST00000473358/Upstream/25474; ENST00000418344/Downstream/24831;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/99306, chr1-CpG: 67/Downstream/24936
Upstream sequence
ggtgatccgtctgccttggcctcccaaagtgctgggattacaggcttgagccattgcacccggccTGTATCTTGTCTTTACGCATACATTTATTTCATAT
Downstream sequence
CTACTTCAGAGGTCTGCTGTCTTAGCTGAGGTTTCTAATATTTGCATGGGGTGCACAATTAGTAAAGTTGGTACTGATATATGTTTCAGAGGTTAAAATC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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