Basic Information
VIS ID
TVIS30011290
Fusion event
HIV-ATP5PB integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
111997987/111455365 (Hg38)
End
111997987/111455365 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATP5PB
miRNAs that regulate target gene
hsa-mir-10a-5p ; hsa-mir-3157-3p ; hsa-mir-18b-3p ; hsa-mir-3146 ; hsa-mir-1267 ; hsa-mir-1287-5p ; hsa-mir-1289 ; hsa-mir-3135b ; hsa-mir-3167 ; hsa-mir-3198 ; hsa-mir-367-5p ; hsa-mir-4294 ; hsa-mir-4309 ; hsa-mir-4423-5p ; hsa-mir-4534 ; hsa-mir-4777-5p ; hsa-mir-518d-5p ; hsa-mir-518e-5p ; hsa-mir-518f-5p ; hsa-mir-519a-5p ; hsa-mir-519b-5p ; hsa-mir-519c-5p ; hsa-mir-520c-5p ; hsa-mir-522-5p ; hsa-mir-523-5p ; hsa-mir-526a ; hsa-mir-6501-5p ; hsa-mir-6514-5p ; hsa-mir-6753-3p ; hsa-mir-7107-3p ; hsa-mir-744-3p ; hsa-mir-8082 ; hsa-mir-876-5p
Nearest miRNA
hsa-mir-101-1/Upstream/1856398; hsa-mir-11399/Downstream/1006405;
Nearest TSS
ENST00000473358/Upstream/5683; ENST00000369718/Downstream/18427;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/5785, chr1-CpG: 32/Downstream/60197
Upstream sequence
TGTTTCTTGCAAATTCATATTTAAAATTTGTATATTAAAGGCAGTTAAAAAAAACTGTTGGAACTTTGTATGGGAAACCAGGTAAAATGTATTTGAGTTT
Downstream sequence
GTAACCCTGTTGTTCTTATGATACATCCTGCCATCCTATGATTCTCAGAAATACTGTAAAATGCTTTCCTAAAAGCCTGCTCTGGGCCTCCCTTACATCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate